Kinesin/daggy
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0c1a634ffae687c0d0a185064ff9832427ef7544
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16 Commits

Author SHA1 Message Date
Ian Roddis
0c1a634ffa Adding in and updating previously commented-out tests 2021-09-15 14:18:44 -03:00
Ian Roddis
d4ec744773 Fixing race condition issue with references in forking executor 2021-09-15 14:12:55 -03:00
Ian Roddis
d731f9f5b1 Adding support for execution on slurm grids 
- Adding support for SlurmTaskExecutor in `daggyd` if DAGGY_ENABLE_SLURM is defined.
- Renaming some test cases
- Enabling compile-time slurm support
- Adding slurm documentation
 2021-09-10 10:53:58 -03:00
Ian Roddis
d15580f47f Massive re-org to allow per-executor job specification formats and executor-specific task validation and expansion. 
A few different renames to try and keep things more consistent.
 2021-09-03 09:10:38 -03:00
Ian Roddis
2c00001e0b Adding support for isGenerator tasks 
- Changing how DAG is represented, both in code and how DAGs are defined
  in JSON.
- Removing std::vector<Task> representation in favour of a map that will
  enforce unique task names
- Task names now have a name (generated), and a definedName.
- Adding support to loggers to add tasks after a DAGRun has been
  initialized.
 2021-08-30 22:05:37 -03:00
Ian Roddis
d4c9b3fcee - Adjusting tests so they run without referencing /tmp 2021-08-23 17:37:33 -03:00
Ian Roddis
2083b1c3f1 Refactoring RunState, fixing logic error in when to end errored DAG runs, added convenience functions to retry failed DAGs. 2021-08-20 21:44:12 -03:00
Ian Roddis
dc8ea4c369 - Adding support for state to OStreamLogger to make it more useful for test cases 
- Making runDAG return the end DAG
- Adding much more robust test for DAG execution for basic tests.
 2021-08-20 12:43:01 -03:00
Ian Roddis
de8025e0f9 - Fixing bug that yielded empty expanded command sets. 2021-08-20 10:58:10 -03:00
Ian Roddis
1668117566 - Checkpointing work on expanding commands. 2021-08-20 10:39:39 -03:00
Ian Roddis
a97c3ff783 - Removing Catch2 code from codebase, will pull it via FetchContent instead. 
- Changing StdOutLogger to OStreamLogger, so that test cases output can be silenced.
 2021-08-09 15:48:53 -03:00
Ian Roddis
a8e85f8feb - Adding StdOutLogger and adding tests for DAG execution to verify it works. 
- Roughing in FileSystemLogger
- Deleting Scheduler code and associated unit tests as being too complicated for maintenance.
- Refactoring namespaces for loggers and executors.
 2021-08-09 14:59:23 -03:00
Ian Roddis
0516bde09f - Refactoring struct (de)serialization 2021-08-09 10:33:49 -03:00
Ian Roddis
1849a2fee4 - Adding TODO list to keep track of things. 
- Adding .idea to gitignore
- Adding DAG execution to utilities, redefining the logger
 2021-08-05 15:24:17 -03:00
Ian Roddis
afcb917cc9 Completing task building. 2021-08-02 15:44:41 -03:00
Ian Roddis
54e8170c68 Adding JSON parsing helpers to Utilities. 2021-08-02 11:31:46 -03:00